Explore Sid Sijbrandij's osteosarcoma research data: single-cell transcriptomics, tissue imaging, cell clusters, and gene set enrichment analysis from his own tumor samples.
outbreak.info SARS-CoV-2 data explorer
Designing RNA sequencing experiments: A practical guide to reproducible gene expression analysis
RNA sequencing (RNA-seq) has become a cornerstone of modern biotechnology, offering a comprehensive and high-resolution view of gene expression that enables the discovery of novel transcripts across diverse biological systems. Its applications extend beyond basic transcriptomics, providing powerful tools for uncovering molecular mechanisms underlying disease, environmental responses, and chemical toxicity. In biotechnology and biomedical research, RNA-seq facilitates the identification of regulatory networks and biomarkers that inform therapeutic development, risk assessment, and precision medicine.
DR Group
For high-dimensional data, dimensionality reduction (DR) methods have been invaluable tools for human understanding, as they can map datasets into two or three dimensions for visualization, providing an intuitive way to understand the data. In recent years, tons of DR methods for data visualization have been proposed, and some are much better than others. In this blog post, we explore several DR methods, discuss how to determine which methods are effective, and explain why some are better than others.
Yanan Rahim Navarez Melo — Bio Sites
Create a free link in bio with Bio Sites by Squarespace. Showcase your links, earn money, and grow your brand online, all with one link.
Semble — A social knowledge network for research
Follow your peers' research trails. Surface and discover new connections. Built on ATProto so you own your data.
Web of Science Master Journal List - WoS MJL by Clarivate
Related work | Data Counterfactuals
Adjacent research areas and starting papers, curated in Semble and synced into the site.
Directory of Open Access Journals – DOAJ
DOAJ is a unique and extensive index of diverse open access journals from around the world, driven by a growing community, committed to ensuring quality content is freely available online for everyone.
VC isn’t VC anymore — understanding the rise of Cancer Capital - Anil Dash
A blog about making culture. Since 1999.
Ingredient Database | Deep-Researched Cosmetic Ingredients | Roots by Benda
Deep-researched cosmetic ingredient database — MoS calculations, SCCS citations, dermal absorption, sensitization data. Multi-jurisdiction regulatory status.
Matadisco: Can We Bootstrap Public Data Discovery with ATProto?
Let's talk about a system for universal data discovery, that doesn't depend on any single institution staying funded or online.
Jwiki — The Jmail Encyclopedia
Jwiki (formerly Jikipedia) — Encyclopedia of the Epstein scandal, grounded in Jmail data. AI-generated from government releases.
human.json
A lightweight protocol for humans to assert authorship of their website content and vouch for the humanity of others.
Researchers published in NEJM about using OpenAI’s o3 DeepResearch to discover strong leads in 18 previously unsolved rare diseases o3 produced *explanations* of old lab results (not diagnoses), which researchers vetted and took to the lab AI is not just a black box openai.com/index/diagnose-rare-childhood…
Using AI to help physicians diagnose rare genetic diseases affecting children
openai.com